PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g01560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 432aa    MW: 48888.5 Da    PI: 7.9178
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g01560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1859105251
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       y+GVr+++ +g+++AeIrdp+ ng   r+++g+f+taeeAa a+++a+ 
  Vradi03g01560.1  59 PYRGVRRRP-WGKFAAEIRDPTRNG--VRVWIGTFDTAEEAALAYDQAAF 105
                      59*******.**********98887..*********************96 PP

2AP246.49.8e-15328378255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y GVr++  +gr++AeIrd  +    + +r++lg+f  aeeAa a+++a+  ++g
  Vradi03g01560.1 328 CYIGVRRRA-SGRFAAEIRDaTR----KgTRVWLGTFSNAEEAALAYDQAAFLMRG 378
                      699***888.8*********442....34**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-3459123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2859117IPR001471AP2/ERF domain
PROSITE profilePS5103222.64259117IPR001471AP2/ERF domain
PRINTSPR003671.7E-106071IPR001471AP2/ERF domain
PfamPF008471.2E-1260105IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2160118IPR016177DNA-binding domain
CDDcd000181.29E-2167116No hitNo description
PRINTSPR003671.7E-108399IPR001471AP2/ERF domain
SMARTSM003802.5E-29328392IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-19328387IPR016177DNA-binding domain
PfamPF008476.5E-11328378IPR001471AP2/ERF domain
PROSITE profilePS5103219.836328386IPR001471AP2/ERF domain
CDDcd000181.81E-24329387No hitNo description
Gene3DG3DSA:3.30.730.101.8E-26329387IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDFNSSFSHQ SLESHLNSWE ALFSFNNNAT NESSLSLQEQ TSDITDDGSN PQTKKERRPY  60
RGVRRRPWGK FAAEIRDPTR NGVRVWIGTF DTAEEAALAY DQAAFLTRGV LATLNFSAQV  120
VVESLQDMGF KALRNGVSPL LELKRMHVMR TKSRASRVKR GCSKLKPDPT AETVLVLEDL  180
GPEYLEQLLT FTSPVALTEF RLDNDDVARW SQCLDASLPK RERIKALSPA HIREEEDGVA  240
FCCVDKVILW VKVVYDKRIV LGKVYMHSDW GTLKETGDIL FEPFSSKDIC CDPFHDYLSF  300
DMIEHSRDPQ EPSEVIEAVE VVQSNKQCYI GVRRRASGRF AAEIRDATRK GTRVWLGTFS  360
NAEEAALAYD QAAFLMRGSC ALLNFPVKRV IESLHQLNYF ACNQACSPAL ELKNRHNMRR  420
KLSSKAKETK T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2460388363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2460388666ATERF1
3gcc_A1e-2460388666ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494963.11e-129PREDICTED: ethylene-responsive transcription factor ERF094-like
SwissprotQ8LDC82e-43ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLV7CZ161e-111V7CZ16_PHAVU; Uncharacterized protein
STRINGGLYMA03G31920.12e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.15e-28ethylene-responsive element binding factor 15